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visual3d:documentation:pipeline:pipeline_commands:manage_file_merge [2025/05/28 19:13] – wikisysopvisual3d:documentation:pipeline:pipeline_commands:manage_file_merge [2025/06/09 20:18] (current) – wikisysop
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 ! /TAGS=ACTION ! /TAGS=ACTION
 ! /IMPORT_ANALOG_FILES=FALSE ! /IMPORT_ANALOG_FILES=FALSE
-! /MERGE_THEIA3D_FILES=FALSE +! /MERGE_PRIMARY_FILES=FALSE 
-! /MERGE_THEIA3D_AND_OTHER_FILES=FALSE+! /MERGE_PRIMARY_AND_OTHER_FILES=FALSE
 ! /MERGE_EVENT_LABELS=FALSE ! /MERGE_EVENT_LABELS=FALSE
-! /THEIA3D_SESSION_FOLDER= +! /PRIMARY_SESSION_FOLDER= 
-! /THEIA3D_FILE_MASK=*.c3d +! /PRIMARY_FILE_MASK=*.c3d 
-! /THEIA3D_FILE_MASK_FOR_MODEL=+! /PRIMARY_FILE_MASK_FOR_MODEL=
 ! /THEIA3D_PREFIX= ! /THEIA3D_PREFIX=
 ! /THEIA3D_SUBJECT_TAG= ! /THEIA3D_SUBJECT_TAG=
-! /THEIA3D_COLOR= +! /PRIMARY_COLOR= 
-! /THEIA3D_SEX=UNKNOWN+! /PRIMARY_SEX=UNKNOWN
 ! /CREATE_MODEL_FOR_EACH_C3D_FILE=FALSE ! /CREATE_MODEL_FOR_EACH_C3D_FILE=FALSE
-! /OTHER3D_SESSION_FOLDER= +! /OTHER_SESSION_FOLDER= 
-! /OTHER3D_FILE_MASK= +! /OTHER_FILE_MASK= 
-! /OTHER3D_MODEL_MASK= +! /OTHER_MODEL_MASK= 
-! /OTHER3D_MODEL_TEMPLATE_MASK= +! /OTHER_MODEL_TEMPLATE_MASK= 
-! /OTHER3D_PREFIX= +! /OTHER_PREFIX= 
-! /OTHER3D_SUBJECT_TAG= +! /OTHER_SUBJECT_TAG= 
-! /OTHER3D_COLOR=+! /OTHER_COLOR=
 ! /NUMBER_OF_SESSION_FILES_ALLOWED= ! /NUMBER_OF_SESSION_FILES_ALLOWED=
 ! /SAVE_DEFAULT_CMZ_FILES=TRUE ! /SAVE_DEFAULT_CMZ_FILES=TRUE
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 |**! /TAGS=ACTION**|If/how file tags should be added onto the files by. Default is to the Action.| |**! /TAGS=ACTION**|If/how file tags should be added onto the files by. Default is to the Action.|
 |**! /IMPORT_ANALOG_FILES=FALSE**|Merge primary files with analog files, such as force plate data (mutually exclusive).| |**! /IMPORT_ANALOG_FILES=FALSE**|Merge primary files with analog files, such as force plate data (mutually exclusive).|
-|**! /MERGE_THEIA3D_FILES=FALSE**|Merge primary files into other files (mutually exclusive)| +|**! /MERGE_PRIMARY_FILES=FALSE**|Merge primary files into other files (mutually exclusive)| 
-|**! /MERGE_THEIA3D_AND_OTHER_FILES=FALSE**|Merge primary files with other data, such as marker-based files (mutually exclusive).|+|**! /MERGE_PRIMARY_AND_OTHER_FILES=FALSE**|Merge primary files with other data, such as marker-based files (mutually exclusive).|
 |**! /MERGE_EVENT_LABELS=FALSE**|Merge event labels between Primary and Secondary .c3d files.| |**! /MERGE_EVENT_LABELS=FALSE**|Merge event labels between Primary and Secondary .c3d files.|
-|**! /THEIA3D_SESSION_FOLDER=**|Folder mask for primary session files (directory within top level directory to search for primary files).| +|**! /PRIMARY_SESSION_FOLDER=**|Folder mask for primary session files (directory within top level directory to search for primary files).| 
-|**! /THEIA3D_FILE_MASK=*.c3d**|File name mask for primary files. Can include wildcards.| +|**! /PRIMARY_FILE_MASK=*.c3d**|File name mask for primary files. Can include wildcards.| 
-|**! /THEIA3D_FILE_MASK_FOR_MODEL=**|File name mask for model file. If blank it will select the first file as the model file. Can include wildcards.|+|**! /PRIMARY_FILE_MASK_FOR_MODEL=**|File name mask for model file. If blank it will select the first file as the model file. Can include wildcards.|
 |**! /THEIA3D_PREFIX=**|Subject Prefixes for Primary files.| |**! /THEIA3D_PREFIX=**|Subject Prefixes for Primary files.|
 |**! /THEIA3D_SUBJECT_TAG=**|Subject tags for Primary files.| |**! /THEIA3D_SUBJECT_TAG=**|Subject tags for Primary files.|
-|**! /THEIA3D_COLOR=**|The color of the Primary file skeleton.| +|**! /PRIMARY_COLOR=**|The color of the Primary file skeleton.| 
-|**! /THEIA3D_SEX=UNKNOWN**|Sex of the primary file.|+|**! /PRIMARY_SEX=UNKNOWN**|Sex of the primary file.|
 |**! /CREATE_MODEL_FOR_EACH_C3D_FILE=FALSE**|For automated model building for Theia3D files, creating a new model for each .c3d. | |**! /CREATE_MODEL_FOR_EACH_C3D_FILE=FALSE**|For automated model building for Theia3D files, creating a new model for each .c3d. |
-|**! /OTHER3D_SESSION_FOLDER=**|Folder mask for merged files (directory within top level directory to search for merged files).| +|**! /OTHER_SESSION_FOLDER=**|Folder mask for merged files (directory within top level directory to search for merged files).| 
-|**! /OTHER3D_FILE_MASK=**|File name mask for merged files. Can include wildcards.| +|**! /OTHER_FILE_MASK=**|File name mask for merged files. Can include wildcards.| 
-|**! /OTHER3D_MODEL_MASK=**|File name mask for static merged files. Can include wildcards.| +|**! /OTHER_MODEL_MASK=**|File name mask for static merged files. Can include wildcards.| 
-|**! /OTHER3D_MODEL_TEMPLATE_MASK=**|File name mask for model files (if needed). Can include wildcards.| +|**! /OTHER_MODEL_TEMPLATE_MASK=**|File name mask for model files (if needed). Can include wildcards.| 
-|**! /OTHER3D_PREFIX=**|Subject prefixes for merged files.| +|**! /OTHER_PREFIX=**|Subject prefixes for merged files.| 
-|**! /OTHER3D_SUBJECT_TAG=**|Subject tags for merged files.| +|**! /OTHER_SUBJECT_TAG=**|Subject tags for merged files.| 
-|**! /OTHER3D_COLOR=**|The color of the secondary data files.|+|**! /OTHER_COLOR=**|The color of the secondary data files.|
 |**! /NUMBER_OF_SESSION_FILES_ALLOWED=**|Restricts the number of session files used.| |**! /NUMBER_OF_SESSION_FILES_ALLOWED=**|Restricts the number of session files used.|
 |**! /SAVE_DEFAULT_CMZ_FILES=TRUE**|Automatically save default CMZ file with specified name.| |**! /SAVE_DEFAULT_CMZ_FILES=TRUE**|Automatically save default CMZ file with specified name.|
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 The command can be edited in a text editor or in a dialog form. To edit in the dialog pop up form either click on the **Edit** button in the pipeline workshop or double-click on the pipeline command. The dialog is shown below. The command can be edited in a text editor or in a dialog form. To edit in the dialog pop up form either click on the **Edit** button in the pipeline workshop or double-click on the pipeline command. The dialog is shown below.
 There are a variety of inputs that can be used to generate CMZs from Theia3D files: There are a variety of inputs that can be used to generate CMZs from Theia3D files:
-{{ visual3d:documentation:pipeline:pipeline_commands:manage_file_merge_dialog.png}} 
-  * **CMZ Directory:** The directory root to search for all of the Theia3D Files. 
  
-  * **Save By:** How the CMZ file should be saved as. +{{ visual3d:documentation:pipeline:pipeline_commands:manage_file_merge_dialog.png}} 
-  * **Use Index Theia Files (.hmx):** If you would like to use a .hmx file to supersede this information.+  * **Root path to search:** The directory root to search for all of the Files. 
 +  * **Open CMZ Library After Processing:**  
 +  * **Automatically save default CMZ files:** How the CMZ file should be saved as. 
 +  * **Use Index Theia Files (.hmx):** If you would like to use a .hmx file to supersede Theia3D files information.
   * **File Tags:** If/how file tags should be added onto the files by.   * **File Tags:** If/how file tags should be added onto the files by.
  
-**Primary:** +**Primary Files:** 
-  * **Primary Data Folder:** Method by which Theia3D data is stored. +  * **Primary Data Folder:** Method by which Primary data is stored. 
-  * **Theia Session Folder Mask:** Folder mask for Theia3d files (directory within top level directory to search for Theia3D files). +  * **Primary Session Folder Mask:** Folder mask for Primary files (directory within top level directory to search for Primary files). 
-  * **Theia File Mask:** File name mask for Theia3D files. Can include wildcards. +  * **Primary File Mask:** File name mask for Primary files. Can include wildcards. 
-  * **Theia File Mask for Model:** File name mask for model file. If blank it will select the first file as the model file. Can include wildcards. +  * **Primary File Mask for Model:** File name mask for model file. If blank it will select the first file as the model file. Can include wildcards. 
-  * **Theia Subject Tags:** Subject tags for Theia3D files. +  * **Theia3D Subject Tags:** Subject tags for Theia3D Primary files. 
-  * **Theia Prefixes:** **Subject prefixes for Theia3D files.** +  * **Theia Prefixes:** Subject prefixes for Theia3D Primary files. 
-  * **Theia Color:** The color of the Theia3D skeleton.+  * **Theia Color:** The color of the Primary skeleton. 
 +  * **Sex:** The sex of the Primary file for model inertial properties.
   * **Choose Kinetic Thorax:** Choose which type of thorax to model.   * **Choose Kinetic Thorax:** Choose which type of thorax to model.
  
-  * **Merge Theia3D Files:** Merge primary Theia3D files into other Theia3D files (mutually exclusive). +  * **Merge Primary Files:** Merge primary files into other primary files (mutually exclusive). 
-  * **Import Analog Files:** Merge primary Theia3D files with analog files, such as force plate data (mutually exclusive). +  * **Import Analog Files:** Merge primary files with analog files, such as force plate data (mutually exclusive). 
-  * **Merge Theia Files and Other Files:** Merge primary Theia3D files with other data, such as marker-based files (mutually exclusive). +  * **Merge Primary Files and Other Files:** Merge primary files with other data, such as marker-based files (mutually exclusive). 
- +  * **Treat Session Files as Independent:** ...
-**Secondary:**+
  
 +**Secondary Files:**
   * **Secondary Data Folder:** Method by which secondary data is stored.   * **Secondary Data Folder:** Method by which secondary data is stored.
   * **Static Data Folder:** Method by which static secondary data is stored.   * **Static Data Folder:** Method by which static secondary data is stored.
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   * **Other Model Template Mask:** File name mask for model files (if needed). Can include wildcards.   * **Other Model Template Mask:** File name mask for model files (if needed). Can include wildcards.
   * **Other Subject Tags:** Subject tags for merged files.   * **Other Subject Tags:** Subject tags for merged files.
-  * **Other Prefixes:** **Subject prefixes for merged files.**+  * **Other Prefixes:** Subject prefixes for merged files.
   * **Other Color:** The color of the secondary data files.   * **Other Color:** The color of the secondary data files.
   * **Analog Filter Cutoff:** The lowpass filter cutoff for the analog files.   * **Analog Filter Cutoff:** The lowpass filter cutoff for the analog files.
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   * **Visual3D Pipeline Pre-Merge:** Visual 3D pipeline to run before the merge occurs.   * **Visual3D Pipeline Pre-Merge:** Visual 3D pipeline to run before the merge occurs.
   * **Visual3D Pipeline Post-Merge:** Visual 3D pipeline to run after the merge occurs.   * **Visual3D Pipeline Post-Merge:** Visual 3D pipeline to run after the merge occurs.
- 
-Differences from the Visual3D Dialog include: 
- 
-**CMZs not opened by default:** you need to load these in through the [[Sift:Application:Load_Library_Dialog|load library]] dialog into Sift. 
- 
-**Automatic Save is on by default:** you just need to select how to save from the given options. 
  
 |[IMAGE] |[IMAGE]
visual3d/documentation/pipeline/pipeline_commands/manage_file_merge.1748459610.txt.gz · Last modified: 2025/05/28 19:13 by wikisysop